Result class returned by methylationGLM

Source: R/result_classes.R

Objects of class 'dnaEPICO_methylationGLM' are list-based results returned by methylationGLM(). They collect the prepared analysis table, compact model results, summaries, diagnostics, annotations, and optional saved files.

Structure

preparedData

Object returned by prepareMethylationGLMData().

distributionPlots

Object returned by plotMethylationGLMDistributions().

modelFits

Object returned by fitMethylationGLMModels().

modelSummaries

Object returned by summarizeMethylationGLMModels().

significantCpGs

Object returned by collectSignificantCpGsMethylationGLM().

diagnosticPlots

Object returned by plotMethylationGLMDiagnostics().

annotation

Object returned by annotateMethylationGLMSummaries().

manhattanPlots

Versioned circular and rectangular Manhattan plots for every raw p-value column in the annotated results.

vennDPlots

Requested coefficient and omnibus model-level Venn plots, worksheet tables, and label mappings.

savedFiles

Object returned by writeMethylationGLMOutputs() when saveOutputs = TRUE, otherwise NULL.

runSettings

High-level settings recorded for the analysis.

See also

methylationGLM()