Result class returned by methylationLME

Source: R/result_classes.R

Objects of class 'dnaEPICO_methylationLME' are list-based results returned by methylationLME(). They collect the prepared longitudinal analysis table, compact mixed-model results, summaries, diagnostics, annotations, and optional saved files.

Structure

preparedData

Object returned by prepareMethylationLMEData().

modelFits

Object returned by fitMethylationLMEModels().

modelSummaries

Object returned by summarizeMethylationLMEModels().

significantInteractions

Object returned by collectSignificantInteractionsMethylationLME().

diagnosticPlots

Object returned by plotMethylationLMEDiagnostics().

annotation

Object returned by annotateMethylationLMESummaries().

manhattanPlots

Versioned circular and rectangular Manhattan plots for every raw p-value column in the annotated results.

vennDPlots

Requested coefficient and omnibus model-level Venn plots, worksheet tables, and label mappings.

savedFiles

Object returned by writeMethylationLMEOutputs() when saveOutputs = TRUE, otherwise NULL.

runSettings

High-level settings recorded for the analysis.

See also

methylationLME()